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    Basic Tissue Processing for TEM
    Digital AssetAvailable

    Basic Tissue Processing for TEM

    Faculty of Science
    Core Facility
    McGill University

    Adapted and Prepared by Jeannie Mui

    Routine TEM tissue processing usually takes three days, with an additional two days for polymerization.

    Day 1

    1. Tissue processing must be performed in a glass vial.
    2. The type of fixation is tissue-dependent.
    3. Wash the tissue with 0.1M sodium cacodylate buffer for 3 x 10 minutes
    4. Post-fix the tissue with 1% aqueous osmium tetroxide + 1.5% aqueous potassium ferrocyanide for 2 hours at 4oC.
    5. Wash the tissue in ddH2O for 3 x 5 min.
    6. For FIB-SEM only, it is recommended to en-bloc stain with 2% aqueous uranyl acetate.
    7. Wash the tissue in ddH2O for 3 x 5 min.
    8. Dehydrate in a graded acetone:ddH20 series of 30%, 50%, 70%, 80%, 90% and 3x100% acetone for 10 minutes (size dependent) each to minimize tissue shrinkage,
    9. Infiltrate the tissue with 1:1 Epon:acetone mixture on a rotator overnight.

    Day 2

    1. Infiltrate the tissue with a 2:1 Epon:acetone mixture on a rotator for 6 to 8 hours, and then infiltrate with a 3:1 Epon:acetone mixture on a rotator overnight.

    Day 3

    1. Infiltrate in 100% Epon on a rotator for 2 hours.
    2. Remove the cap from the glass vial, and leave the tissue in 100% Epon under vacuum for 2 hours.
    3. Embed the tissue in an embedding mould. Add a paper label with the sample ID to the embedding mould.
    4. Polymerize the tissue in the oven at 58 to 60oC for 48 hours.
    Facility for Electron Microscopy Research

    Facility for Electron Microscopy Research

    Faculty of Science

    Research lab focused on advancing scientific knowledge and innovation.

    JO

    Joaquin Ortega

    Digital AssetAvailable

    Basic Tissue Processing for TEM

    Faculty of Science
    Core Facility
    McGill University

    Adapted and Prepared by Jeannie Mui

    Routine TEM tissue processing usually takes three days, with an additional two days for polymerization.

    Day 1

    1. Tissue processing must be performed in a glass vial.
    2. The type of fixation is tissue-dependent.
    3. Wash the tissue with 0.1M sodium cacodylate buffer for 3 x 10 minutes
    4. Post-fix the tissue with 1% aqueous osmium tetroxide + 1.5% aqueous potassium ferrocyanide for 2 hours at 4oC.
    5. Wash the tissue in ddH2O for 3 x 5 min.
    6. For FIB-SEM only, it is recommended to en-bloc stain with 2% aqueous uranyl acetate.
    7. Wash the tissue in ddH2O for 3 x 5 min.
    8. Dehydrate in a graded acetone:ddH20 series of 30%, 50%, 70%, 80%, 90% and 3x100% acetone for 10 minutes (size dependent) each to minimize tissue shrinkage,
    9. Infiltrate the tissue with 1:1 Epon:acetone mixture on a rotator overnight.

    Day 2

    1. Infiltrate the tissue with a 2:1 Epon:acetone mixture on a rotator for 6 to 8 hours, and then infiltrate with a 3:1 Epon:acetone mixture on a rotator overnight.

    Day 3

    1. Infiltrate in 100% Epon on a rotator for 2 hours.
    2. Remove the cap from the glass vial, and leave the tissue in 100% Epon under vacuum for 2 hours.
    3. Embed the tissue in an embedding mould. Add a paper label with the sample ID to the embedding mould.
    4. Polymerize the tissue in the oven at 58 to 60oC for 48 hours.
    Basic Tissue Processing for TEM
    Facility for Electron Microscopy Research

    Facility for Electron Microscopy Research

    Faculty of Science

    Research lab focused on advancing scientific knowledge and innovation.

    JO

    Joaquin Ortega

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    © 2026 LabGiant
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